All were taken to hospital and later joined by the French consul, who is said to have contacted Philippe immediately.
Two of those hurt were released from hospital on Thursday, while the third remained in a ward.
A criminal investigation into the attack has been launched in Israel. The perpetrators are believed to be Israeli men, detectives said.
There was no comment on the incident from France's Ambassador to Israel, or from the French foreign ministry.
On Monday, during a meeting with members of the Palestinian Central Council, President Macron reaffirmed his country's commitment to a two-state solution to the Israel-Palestine conflict and called for "calm and dialogue" among Palestinian leaders.